17. Cheng, Z.; Jones, M. R. “Separation of Nanoparticle Seed Pseudoisomers via Amplification of Their Crystallographic Differences” J. Am. Chem. Soc., 2023. 145, 27702–27707. DOI: 10.1021/jacs.3c09945
16. Qiao, L.; Pollard, N.; Senanayake, R. D.; Yang, Z.; Kim, M.; Ali, A. S.; Hoang, M. T.; Yao, N.; Han, Y.; Hernandez, R.; Clayborne, A. Z.; Jones, M. R. “Atomically Precise Nanoclusters Predominantly Seed Gold Nanoparticle Syntheses” Nat. Commun., 2023, 14, 4408. DOI: 10.1038/s41467-023-40016-3
15. Rehn, S. M.; Gerrard-Anderson, T. M.; Chen. Y.; Wang, P.; Robertson, T.; Senftle, T. P.; Jones, M. R. “Surface Ligands Dictate the Mechanical Properties of Inorganic Nanomaterials” ACS Nano, 2023, 17, 6698-6707. DOI: 10.1021/acsnano.2c12497
14. Scarabelli, L.; Sun, M.; Zhuo, X.; Sungjae, Y.; Millstone, J. E.; Jones, M. R.; Liz-Marzán, L. M. “Plate-Like Colloidal Metal Nanoparticles” Chem. Rev., 2023, 123, 3493-3542. DOI: 10.1021/acs.chemrev.3c00033
13. Qiao, L.;* Fu, Z.;* Zhao, W.; Cui, Y.; Xing, X.; Xie, Y.; Li, J.; Gao, G.; Xuan, Z.; Liu, Y.; Lee, C.; Han, Y.; Cheng, Y.; He, S.; Jones, M. R.; Swihart, M. T. “Branching Phenomena in Nanostructure Synthesis Illuminated by the Study of Ni-Based Nanocomposites” Chem. Sci., 2023, 14, 1205. DOI: 10.1039/d2sc05077c
12. Yafei, S. S.; Wang, Y.; De Sienna, M.; Asadpour, R.; Torma, A.; Terlier, T.; Ho, K.; Li, W.; Puthirath, A.; Agarwal, A.; Traore, B.; Jones, M. R.; Giridharagopal, R.; Ajayan, P. M.; Strzalka, J.; Ginger, D.; Katan, C.; Mohammad, A. A.; Even, J.; Kanatzidis, M. G.; Mohite., A. D. “Deterministic Fabrication of 3D/2D Perovskite Bilayer Stacks for Durable and Efficient Solar Cells” Science, 2022, 377, 1425. DOI: 10.1126/science.abq7652
11. Cheng, Z.; Jones, M. R. “Assembly of Planar Chiral Superlattices from Achiral Building Blocks” Nat. Commun., 2022, 13, 4207. DOI: 10.1038/s41467-022-31868-2
10. Shi, C.; Cao, M. C.; Rehn, S. M.; Bae, S.-H.; Kim, J.; Jones, M. R.; Muller, D. A.; Han, Y. “Uncovering Material Deformations via Machine Learning Combined with Four-Dimensional Scanning Transmission Electron Microscopy” NPJ Comput. Mater., 2022, 8, 114. DOI: 10.1038/s41524-022-00793-9
9. Ci, P.; Sun, M.; Upadhyaya, M.; Song, H.; Jin, L.; Sun, B.; Jones, M. R.; Ager, J. W.; Aksamija, Z.; Wu, J. “Giant Isotope Effect of Thermal Conduction in Silicon Nanowires” Phys. Rev. Lett., 2022, 128, 085901. DOI: 10.1103/PhysRevLett.128.085901
8. Sun, M.; Cheng, Z.; Chen, W.; Jones, M. R. “Understanding Symmetry Breaking at the Single-Particle Level via the Growth of Tetrahedron-Shaped Nanocrystals from Higher-Symmetry Precursors” ACS Nano, 2021, 15, 15953–15961. DOI: 10.1021/acsnano.1c04056
7. Rehn, S. M.; Gerrard-Anderson, T. M.; Qiao, L.; Zhu, Q.; Wehmeyer, G.; Jones, M. R. “Mechanical Reshaping of Inorganic Nanostructures with Weak Nanoscale Forces” Nano Lett., 2020, 21, 130–135. DOI: 10.1021/acs.nanolett.0c03383
6. Kress, R. N.; Jones, M. R. “Colloidal Interactions get Patchy and Directional” Proc. Natl. Acad. Sci., 2020, 117, 15382-15384. DOI: 10.1073/pnas.2006330117
5. Wang, C.-F.; Cheng, Z.; O’Callahan, B. T.; Crampton, K. T.; Jones, M. R.; El-Khoury, P. Z. “Tip-Enhanced Multipolar Raman Scattering”. J. Phys. Chem. Lett., 2020, 11, 2464. DOI: 10.1021/acs.jpclett.0c00559
4. Bhattarai, A.; Cheng, Z.; Joly, A. G.; Novikova, I. V.; Evans, J. E.; Schultz, Z. D.; Jones, M. R.; El-Khoury, P. Z. “Tip-Enhanced Raman Nanospectroscopy of Smooth Spherical Gold Nanoparticles” J. Phys. Chem. Lett., 2020, 11, 1795. DOI: 10.1021/acs.jpclett.0c00217
3. Marolf, D. M.; Jones, M. R. “Measurement Challenges in Dynamic and Nonequilibrium Nanoscale Systems” Anal. Chem., 2019, 91, 13324. DOI: 10.1021/acs.analchem.9b02702
2. Yi, C.; Su, M.-N.; Dongare, P. D.; Chakraborty, D.; Cai, Y.-Y.; Marolf, D. M.; Kress, R. N.; Ostovar, B.; Tauzin, L. J.; Wen, F.; Chang, W.-S.; Jones, M. R.; Sader, J. E.; Halas, N. J.; Link, S. “Polycrystallinity of Lithographically Fabricated Plasmonic Nanostructures Dominates their Acoustic Vibrational Damping” Nano Lett., 2018, 18, 3494. DOI: 10.1021/acs.nanolett.8b00559
1. Rehn, S. M.; Jones, M. R. “New Strategies for Probing Energy Systems with in-situ Liquid Phase TEM” ACS Energy Lett., 2018, 3, 1269. DOI: 10.1021/acsenergylett.8b00527
Graduate and Postdoctoral
41. Hauwiller, M. R.; Ye, X., Jones, M. R.; Chan, C. M.; Calvin, J. J.; Zheng, H.; Alivisatos, A. P. “Tracking the Effects of Ligands on Oxidative Etching of Gold Nanorods in Graphene Liquid Cell Electron Microscopy” ACS Nano, 2020, 14, 10239. DOI: 10.1021/acsnano.0c03601
40. Moreau, L. M.; Jones, M. R.; Roth, E. W.; Wu, J.; Kewalramani, S.; O’Brien, M. N.; Chen, B.-R.; Mirkin, C. A.; Bedzyk, M. J. “The Role of Trace Ag in the Synthesis of Au Nanorods” Nanoscale, 2019, 11, 11744-11754 .
39. Hauwiller, M. R.; Frechette, L. B.; Jones, M. R.; Ondry, J. C.; Rotskoff, G. M.; Geissler, P. L.; Alivisatos, A. P. “Unraveling Kinetically-Driven Mechanisms of Nanocrystal Shape Transformations using Graphene Liquid Cell Electron Microscopy” Nano Lett., 2018, 18, 5731. DOI: 10.1021/acs.nanolett.8b02337
38. Hauwiller, M. R.; Frechette, L. B.; Jones, M. R.; Ondry, J. C.; Geissler, P. L.; Alivisatos, A. P. “Using Graphene Liquid Cell Electron Microscopy to Elucidate Nanocrystal Etching Mechanisms” Microsc. Microanal., 2018, 24, 246. DOI: 10.1017/S1431927618001721
37. Raja, S. N.; Ye, X.; Jones, M. R.; Lin, L.; Govindjee, S.; Ritchie, R. O. “Microscopic Mechanisms of Deformation Transfer in High Dynamic Range Branched Nanoparticle Deformation Sensors” Nat. Commun., 2018, 9, 1155. DOI: 10.1038/s41467-018-03396-5
36. Lin, Q.-Y.;* Mason, J. A.;* Li, Z.; Zhou, W.; O’Brien, M. N.; Brown, K. A.; Jones, M. R.; Butun, S.; Dravid, V. P.; Aydin, K.; Mirkin, C. A. “Building Superlattices from Individual Nanoparticles via Template-Confined DNA-Mediated Assembly” Science, 2018, ASAP. DOI: 10.1126/science.aaq0591
35. Litt, D. B.; Jones, M. R.; Hentschel, M.; Wang, Y.; Yang, S.; Zhang, X.; Alivisatos, A. P. “Hybrid Lithographic and DNA-directed Assembly of a Configurable Plasmonic Metamaterial that Exhibits Electromagnetically Induced Transparency” Nano Lett., 2018, 18, 859. DOI: 10.1021/acs.nanolett.7b04116
34. Kim, J.; Ou, Z.; Jones, M. R.; Song, X.; Chen, Q. “Imaging the “Polymerization” of Multivalent Nanoparticles in Solution” Nat. Commun., 2017, 8, 761. DOI: 10.1038/s41467-017-00857-1
33. Jones, M. R.; Kohlstedt, K. L.; O’Brien, M. N.; Wu, J. S.; Schatz, G. C.; Mirkin, C. A. “Deterministic Symmetry Breaking of Plasmonic Nanostructures Enabled by DNA-Programmable Assembly” Nano Lett., 2017, 17, 5830. DOI: 10.1021/acs.nanolett.7b03067
32. Singh, A.; Singh, A.; Ong, G. K.; Jones, M. R.; Nordlund, D.; Bustillo, K.; Ciston, J.; Alivisatos, A. P.; Milliron, D. J. “Dopant Mediated Assembly of Cu2ZnSnS4 Nanorods into Atomically Coupled 2D Sheets in Solution” Nano Lett., 2017, 17, 3421. DOI: 10.1021/acs.nanolett.7b00232
31. Laramy, C. R.;* Fong, L.-K.;* Jones, M. R.; O’Brien, M. N.; Schatz, G. C.; Mirkin, C. A.; “Understanding Nanoparticle-Mediated Nucleation Pathways of Anisotropic Nanoparticles” Chem. Phys. Lett., 2017, 683, 389. DOI: 10.1016/j.cplett.2017.01.050
30. Cho, H.; Jones, M. R.; Nguyen, S. C.; Zettl, A.; Alivisatos, A. P. “Use of Graphene and Its Derivatives for Liquid Phase Transmission Electron Microscopy of Radiation-Sensitive Specimens” Nano Lett., 2017, 17, 414. DOI: 10.1021/acs.nanolett.6b04383
29. Jones, M. R.;* Ye, X.;* Frechette, L. B.; Chen, Q.; Powers, A. S.; Ercius, P.; Dunn, G.; Rotskoff, G. M.; Nguyen, S. C.; Adiga, V. P.; Zettl, A.; Rabani, E.; Geissler, P. L.; Alivisatos, A. P. “Single-Particle Mapping of Non-Equilibrium Nanocrystal Transformations” Science, 2016, 354, 874. DOI: 10.1126/science.aah4434
28. O’Brien, M. N.; Jones, M. R.; Mirkin, C. A. “The Nature and Implications of Uniformity in the Hierarchical Organization of Nanomaterials” Proc. Natl. Acad. Sci. U.S.A., 2016, 113, 11717. DOI: 10.1073/pnas.1605289113
27. Kim, J.; Jones, M. R.; Ou, Z.; Chen, Q. “In Situ Electron Microscopy Imaging and Quantitative Structural Modulation of Nanoparticle Superlattices” ACS Nano, 2016, 10, 9801. DOI: 10.1021/acsnano.6b05270
26. Kim, Y.; Jones, M. R.;* Macfarlane, R. J.;* Mirkin, C. A. “Transmutable Nanoparticles with Reconfigurable Surface Ligands” Science, 2016, 351, 579. DOI: 10.1126/science.aad2212
25. Ye, X.; Zhu, C.; Ercius, P.; Raja, S. N.; He, B.; Jones, M. R.; Hauwiller, M. R.; Liu, Y.; Xu, T.; Alivisatos, A. P. “Structural Diversity in Binary Superlattices Self-Assembled from Polymer-Grafted Nanocrystals” Nat. Commun., 2015, 6, 10052. DOI: 10.1038/ncomms10052
24. O’Brien, M. N.; Jones, M. R.; Lee, B.; Mirkin, C. A. “Anisotropic Nanoparticle Complementarity in DNA-Mediated Cocrystallization” Nat. Mater., 2015, 14, 833. DOI: 10.1038/nmat4293
23. Jones, M. R.;* Randeria, P. S.;* Kohlstedt, K. L.; Banga, R. J.; Schatz, G. C.; Mirkin, C. A. “What Controls the Hybridization Thermodynamics of Spherical Nucleic Acids?” J. Am. Chem. Soc., 2015, 137, 3486. DOI: 10.1021/jacs.5b00670
22. Jones, M. R.; Seeman, N. C.; Mirkin, C. A. “Programmable Materials and the Nature of the DNA Bond” Science, 2015, 347, 1260901. DOI: 10.1126/science.1260901
21. Jones, M. R.;* O’Brien, M. N.;* Kohlstedt, K. L.; Schatz, G. C.; Mirkin, C. A. “Uniform Circular Disks with Synthetically Tailorable Diameters: Two-Dimensional Nanoparticles for Plasmonics” Nano Lett., 2015, 15, 1012. DOI: 10.1021/nl5038566
20. O’Brien, M. N.; Radha, B.; Brown, K. A.; Jones, M. R.; Mirkin, C. A. “Langmuir Analysis of Nanoparticle Polyvalency in DNA-Mediated Adsorption” Angew. Chemie. Int. Ed., 2014, 53, 9532. DOI: 10.1002/anie.201405317
19. Mangelson, B. F.; Jones, M. R.; Park, D. J.; Shade, C. M.; Schatz, G. C.; Mirkin, C. A. “Synthesis and Characterization of a Plasmonic-Semiconductor Composite Containing Rationally Designed, Optically Tunable Gold Nanorod Dimers and Anatase TiO2” Chem. Mater., 2014, 26, 3818. DOI: 10.1021/cm5014625
18. O’Brien, M. N.; Jones, M. R.; Brown, K. A.; Mirkin, C. A. “Universal Noble Metal Nanoparticle Seeds Realized Through Iterative Reductive Growth and Oxidative Dissolution Reactions” J. Am. Chem. Soc., 2014, 136, 7603. DOI: 10.1021/ja503509k
17. Zhou, Y.;* Zhou, X.;* Park, D. J.; Torabi, K.; Brown, K. A.; Jones, M. R.; Zhang, C.; Schatz, G. C.; Mirkin, C. A. “Shape-Selective Deposition and Assembly of Anisotropic Nanoparticles” Nano Lett., 2014, 14, 2157. DOI: 10.1021/nl500471g
16. Young, K. L.;* Ross, M. B.;* Blaber, M. G.; Rycenga, M.; Jones, M. R.; Zhang, C.; Senesi, A. J.; Schatz, G. C.; Mirkin, C. A. “Using DNA to Design Plasmonic Metamaterials with Tunable Optical Properties” Adv. Mater., 2014, 26, 653. DOI: 10.1002/adma.201302938
15. Macfarlane, R. J.; Jones, M. R.; Lee, B.; Auyeung, E.; Mirkin, C. A. “Topotactic Interconversion of Nanoparticle Superlattices” Science, 2013, 341, 1222. DOI: 10.1126/science.1241402
14. Senesi, A. J.; Eichelsdoerfer, D. J.; Macfarlane, R. J.; Jones, M. R.; Auyeung, E.; Lee, B.; Mirkin, C. A. “Stepwise Evolution of DNA-Programmable Nanoparticle Superlattices” Angew. Chemie. Int. Ed., 2013, 52, 6624. DOI: 10.1002/anie.201301936
13. Jones, M. R.; Mirkin, C. A. “Bypassing the Limitations of Classical Chemical Purification with DNA-Programmable Nanoparticle Recrystallization” Angew. Chemie. Int. Ed., 2013, 52, 2886. DOI: 10.1002/anie.201209504
12. Jones, M. R.; Mirkin, C. A. “Self-Assembly Gets New Direction” Nature, 2012, 491, 42. DOI: 10.1038/491042a
11. Wu, J.; Liu, G.; Auyeung, E.; Cutler, J.; Macfarlane, R. J.; Jones, M. J.; Zhang, K.; Osberg, K.; Mirkin, C. A.; Dravid, V. P. “Electron Tomography of DNA-Linked Nanoparticle Superlattices” Microsc. Microanal., 2012, 18, 1646. DOI: 10.1017/S1431927612010082
10. Young, K. L.; Jones, M. R.; Zhang, J.; Macfarlane, R. J.; Esquivel-Sirvent, R.; Nap, R. J.; Wu, J.; Schatz, G. C.; Lee, B.; Mirkin, C. A. “Assembly of Reconfigurable One-Dimensional Colloidal Superlattices due to a Synergy of Fundamental Nanoscale Forces” Proc. Natl. Acad. Sci. U.S.A., 2012, 109, 2240. DOI: 10.1073/pnas.1119301109
9. Auyeung, E.;* Cutler, J. I.;* Macfarlane, R. J.; Jones, M. R.; Wu, J.; Liu, G.; Zhang, K.; Osberg, K. D.; Mirkin, C. A. “Synthetically Programmable Nanoparticle Superlattices using a Hollow Three-Dimensional Spacer Approach” Nat. Nanotechnol., 2012, 7, 24. DOI: 10.1038/nnano.2011.222
8. Jones, M. R.; Macfarlane, R. J.; Prigodich, A. E.; Patel, P. C.; Mirkin, C. A. “Nanoparticle Shape Anisotropy Dictates the Collective Behavior of Surface-Bound Ligands” J. Am. Chem. Soc., 2011, 133, 18865. DOI: 10.1021/ja206777k
7. Macfarlane, R. J.; Lee, B.; Jones, M. R.; Harris, N.; Schatz, G. C.; Mirkin, C. A. “Nanoparticle Superlattice Engineering with DNA” Science, 2011, 334, 204. DOI: 10.1126/science.1210493
6. Jones, M. R.; Osberg, K. D.; Macfarlane, R. J.; Langille, M. R.; Mirkin, C. A. “Templated Techniques for the Synthesis and Assembly of Plasmonic Nanostructures” Chem. Rev., 2011, 111, 3736. DOI: 10.1021/cr1004452
5. Machan, C. W.; Spokoyny, A. M.; Jones, M. R.; Sarjeant, A. A.; Stern, C. L.; Mirkin, C. A. “The Plasticity of the Nickel(II) Coordination Environment in Complexes with Hemilabile Phosphino-Thioether Ligands” J. Am. Chem. Soc., 2011, 133, 3023. DOI: 10.1021/ja109624m
4. Jones, M. R.; Macfarlane, R. J.; Lee, B.; Zhang, J.; Young, K.; Senesi, A.; Mirkin, C. A. “DNA-Nanoparticle Superlattices formed from Anisotropic Building Blocks” Nat. Mater., 2010, 9, 913. DOI: 10.1038/nmat2870
3. Macfarlane, R. J.; Jones, M. R.; Senesi, A. J.; Young, K. L.; Lee, B.; Mirkin, C. A. “Establishing the Design Rules for DNA-Mediated Programmable Colloidal Crystallization” Angew. Chemie. Int. Ed., 2010, 49, 4589. DOI: 10.1002/anie.201000633
2. Jones, M. R.; Millstone, J. E.; Giljohann, D. A.; Seferos, D. S.; Young, K. L.; Mirkin, C.A. “Plasmonically Controlled Nucleic Acid Dehybridization with Gold Nanoprisms” ChemPhysChem, 2009, 10, 1461. DOI: 10.1002/cphc.200900269
1. Millstone, J.E.; Wei, W.; Jones, M. R.; Yoo, H.; Mirkin, C. A. “Iodide Ions Control Seed-Mediated Growth of Anisotropic Gold Nanoparticles” Nano Lett., 2008, 8, 2526. DOI: 10.1021/nl8016253
*Indicates equal author contribution